Gene: IFNL4

Alternate names for this Gene: IFNAN

Gene Summary: This gene is a polymorphic pseudogene which, in some humans, encodes the interferon (IFN) lambda 4 protein. Humans are polymorphic for the dinucleotide TT/deltaG allele. Compared to the ancestral state in non-human primates, the TT allele produces a frameshift in the coding region of this gene which is predicted to induce nonsense-mediated mRNA decay. This allele, and an allele in the first intron of this gene, have experienced a rapid increase in frequency and show indications of positive selection. The ancestral states of these alleles are associated with an impaired ability to clear hepatitis C virus. This gene, like other type III interferons (IFNs), interacts with the IFN lambda receptor complex (IFNLR) whose signaling is generally restricted to epithelial cells. This gene resides in a cluster of four type III IFN genes and at least two pseudogenes on chromosome 19q13.2. In general, interferons are produced in response to viral infection and block viral replication and propagation to uninfected cells by activating the JAK-STAT pathway and up-regulating antiviral genes. Multiple alternatively spliced transcripts have been described for this gene but their biological validity and protein coding status is still being ascertained.

Gene is located in Chromosome: 19

Location in Chromosome : 19q13.2

Description of this Gene: interferon lambda 4 (gene/pseudogene)

Type of Gene: protein-coding

rs4803221 in IFNL4 gene and Hepatitis C PMID 31260374 2019 Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.

PMID 30593799 2019 Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.

rs12979860 in IFNL4 gene and Hepatitis C, Chronic PMID 23420232 2013 Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.

PMID 19684573 2009 Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance.

rs4803221 in IFNL4 gene and Viral Load result PMID 31260374 2019 Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.

rs12983038 in IFNL4 gene and mathematical ability PMID 30038396 2018 Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.