Condition: Breast Carcinoma 
rs36059695 in 
ABCA8 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs3132610 in 
ABCF1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs117078955 in 
ACO2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6828523 in 
ADAM29 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs35273427 in 
ADAM30 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12906542 in 
ADAMTS7P3 gene and 
Breast Carcinoma
PMID 23354978 2013 Genetic variants associated with breast cancer risk for Ashkenazi Jewish women with strong family histories but no identifiable BRCA1/2 mutation.
rs6725517 in 
ADCY3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs73348588 in 
ADCY8 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11076805 in 
ADCY9 gene and 
Breast Carcinoma
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10623258 in 
ADSS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs116095464 in 
AHRR gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10644111 in 
AKAP9 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs2432539 in 
AMFR gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs369328859 in 
ANKIB1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs56069439 in 
ANKLE1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
rs12474538 in 
ANTXR1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs970821 in 
ANXA13;LOC105375739 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11552449 in 
AP4B1;DCLRE1B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs527616 in 
AQP4-AS1 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1436904 in 
AQP4-AS1;CHST9 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs4763 in 
ARHGAP27 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs140783387 in 
ARHGAP5 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs720475 in 
ARHGEF5 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs2732699 in 
ARL17B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10474352 in 
ARRDC3-AS1 gene and 
Breast Carcinoma
PMID 25038754 2014 In a three-stage genome-wide association study among East Asian women including 22,780 cases and 24,181 controls, we identified 3 genetic loci newly associated with breast cancer risk, including rs4951011 at 1q32.1 (in intron 2 of the ZC3H11A gene; P=8.82×10(-9)), rs10474352 at 5q14.3 (near the ARRDC3 gene; P=1.67×10(-9)) and rs2290203 at 15q26.1 (in intron 14 of the PRC1 gene; P=4.25×10(-8)).
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10796944 in 
ASH1L gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs803903 in 
ASTN2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1895062 in 
ASTN2-AS1;ASTN2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7223535 in 
ATAD5 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs111605422 in 
ATE1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs111549985 in 
ATG10 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs3819405 in 
ATXN1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1053338 in 
ATXN7 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12548629 in 
BAALC;BAALC-AS1 gene and 
Breast Carcinoma
PMID 29698419 2018 Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.
rs4808075 in 
BABAM1;USHBP1 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 23544013 2013 Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.
PMID 20852631 2010 Five SNPs on 19p13 were associated with breast cancer risk (P(trend) = 2.3 × 10⁻⁹ to P(trend) = 3.9 × 10⁻⁷), two of which showed independent associations (rs8170, hazard ratio (HR) = 1.26, 95% CI 1.17-1.35; rs2363956 HR = 0.84, 95% CI 0.80-0.89).
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
rs79518236 in 
BAIAP2L1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2303282 in 
BBS2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6020772 in 
BCAS4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12207986 in 
BCKDHB gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11571818 in 
BRCA2 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs13195401 in 
BTN2A1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs77688320 in 
C2CD6 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11082321 in 
CABLES1 gene and 
Breast Carcinoma
PMID 25038754 2014 Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.
rs9350395 in 
CASC15 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12922061 in 
CASC16 gene and 
Breast Carcinoma
PMID 24143190 2013 Genome-wide association study of breast cancer in the Japanese population.
PMID 21263130 2011 Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.
PMID 20872241 2011 A combined analysis of genome-wide association studies in breast cancer.
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
PMID 19330030 2009 A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).
PMID 23001122 2012 Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.
PMID 17529974 2007 At present, no genes have been identified in the linkage disequilibrium block containing rs13387042. rs3803662 is near the 5' end of TNRC9 , a high mobility group chromatin-associated protein whose expression is implicated in breast cancer metastasis to bone.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 17529967 2007 Genome-wide association study identifies novel breast cancer susceptibility loci.
PMID 23544012 2013 Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 20585626 2010 SNP rs4784227 is located at 16q12.1, a region identified previously for breast cancer risk among Europeans.
PMID 25327703 2014 Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2392780 in 
CASC21;CASC8;POU5F1B;PCAT1 gene and 
Breast Carcinoma
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
rs13281615 in 
CASC8;POU5F1B;PCAT1;CASC21 gene and 
Breast Carcinoma
PMID 17529967 2007 Genome-wide association study identifies novel breast cancer susceptibility loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6472903 in 
CASC9 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs3769821 in 
CASP8 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs199867187 in 
CASZ1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs8082452 in 
CBX8 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs8137282 in 
CCDC134 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12662670 in 
CCDC170 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 27354352 2016 Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
rs3734805 in 
CCDC170;LOC107986528 gene and 
Breast Carcinoma
PMID 21263130 2011 We also identified two variants (rs3734805 and rs9383938) mapping to 6q25.1 estrogen receptor 1 (ESR1), which were associated with breast cancer in subjects of northern European ancestry (rs3734805: OR = 1.19, 95% CI = 1.11 to 1.27, P = 1.35 × 10(-7); rs9383938: OR = 1.18, 95% CI = 1.11 to 1.26, P = 1.41 × 10(-7)).
rs941764 in 
CCDC88C gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs34507830 in 
CCND1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1552172 in 
CD160 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2724379 in 
CD34 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs612683 in 
CDC14A;LOC105379827 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7971 in 
CDCA7L;DNAH11 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2223621 in 
CDKAL1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1011970 in 
CDKN2B-AS1 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
rs13329835 in 
CDYL2 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs182731523 in 
CFLAR-AS1;CFLAR gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17879961 in 
CHEK2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs12458099 in 
CHST9;AQP4-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs73822569 in 
CMC1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs9833888 in 
CMSS1;FILIP1L gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs151329939 in 
CNTD1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs72826962 in 
CNTNAP1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2075555 in 
COL1A1 gene and 
Breast Carcinoma
PMID 17903305 2007 The top SNP associations in GEE models for each trait were as follows: breast cancer, rs2075555, p = 8.0 x 10(-8) in COL1A1; and prostate cancer, rs9311171, p = 1.75 x 10(-6) in CTDSPL.
rs11298677 in 
COL8A1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs72856431 in 
CPNE5 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17156577 in 
CREB5 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13025833 in 
CTNNA2 gene and 
Breast Carcinoma
PMID 25824743 2015 A pilot genome-wide association study of breast cancer susceptibility loci in Indonesia.
rs71559437 in 
CUX1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs348196 in 
DAP3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12091730 in 
DAP3P1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10906806 in 
DCLRE1CP1;ACBD7-DCLRE1CP1 gene and 
Breast Carcinoma
PMID 30787463 2019 Genome-wide association study of germline variants and breast cancer-specific mortality.
rs6488809 in 
DERA gene and 
Breast Carcinoma
PMID 31371054 2019 Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.
rs11693806 in 
DIRC3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs2016394 in 
DLX2-DT gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs72806318 in 
DNAJC1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6946892 in 
DPY19L2P2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11135046 in 
EBF1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs13256025 in 
EBF2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1971136 in 
EFR3B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs61865900 in 
EGR2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs172032 in 
ELL gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs11249433 in 
EMBP1 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 19330030 2009 A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).
rs13393577 in 
ERBB4 gene and 
Breast Carcinoma
PMID 22452962 2012 Furthermore, this study provides strong evidence implicating rs13393577 at 2q34 as a new risk variant for breast cancer.
rs2747652 in 
ESR1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 22976474 2012 A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.
rs11117758 in 
ESRRG gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs72755295 in 
EXO1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs140945602 in 
FAF1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs57237364 in 
FBXL13;FAM185A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13186320 in 
FGF10 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10510097 in 
FGFR2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
PMID 27354352 2016 Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.
PMID 20872241 2011 A combined analysis of genome-wide association studies in breast cancer.
PMID 17529973 2007 A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer.
PMID 21263130 2011 Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.
PMID 23544012 2013 Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
PMID 21060860 2010 FGFR2 rs2981575 had the strongest association with breast cancer risk (per allele HR = 1.28, 95% CI 1.18-1.39, ).
PMID 24143190 2013 Genome-wide association study of breast cancer in the Japanese population.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 19330030 2009 A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
PMID 17529967 2007 Genome-wide association study identifies novel breast cancer susceptibility loci.
PMID 27764800 2016 Strong association between the FGFR2 locus and ER status of breast cancer patients was observed (ER-positive n=6211, ER-negative n=2516; rs3135718 OR=1.34 p=5.46×10-12).
PMID 27764800 2016 GWAS in the SIGNAL/PHARE clinical cohort restricts the association between the FGFR2 locus and estrogen receptor status to HER2-negative breast cancer patients.
PMID 22951594 2012 In addition, rs3750817 in intron 2 of the fibroblast growth factor receptor 2 gene, which was reported to be associated with breast cancer susceptibility, was significantly replicated with P(combined) of 8.47 × 10(-8) with OR=1.22.
rs9837602 in 
FILIP1L;CMSS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1830298 in 
FLACC1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs62079673 in 
FOXK2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6805189 in 
FOXP1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10906522 in 
FRMD4A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs56084662 in 
FRY gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs11075995 in 
FTO gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs117618124 in 
GAREM1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2965183 in 
GATAD2A;MIR640 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1057941 in 
GBAP1 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs71338792 in 
GIPR gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1858826 in 
GNGT1 gene and 
Breast Carcinoma
PMID 29278617 2018 Genome-wide meta-analyses identifies novel taxane-induced peripheral neuropathy-associated loci.
rs60504827 in 
GPR161 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1943466 in 
GRAMD1B gene and 
Breast Carcinoma
PMID 25117820 2014 Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.
rs113577745 in 
GRHL1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs5776993 in 
GSTM2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17598658 in 
H2BC6 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs45509595 in 
H3C11;H4C13 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs139424826 in 
HCN1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs181270898 in 
HIVEP3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs115392158 in 
HLA-B gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs12601991 in 
HNF1B gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs2926585 in 
HNF4G gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs117758012 in 
HOOK2;MAST1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs139059349 in 
HORMAD2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs188460188 in 
HORMAD2-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6596100 in 
HSPA4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7937840 in 
INCENP gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7017697 in 
INTS10 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs71695136 in 
IST1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6762644 in 
ITPR1 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs34044188 in 
JMJD1C gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2532263 in 
KANSL1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11119608 in 
KCNH1 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs1685191 in 
KCNN4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs7240205 in 
KCTD1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2992756 in 
KLHDC7A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs4930561 in 
KMT5B gene and 
Breast Carcinoma
PMID 29059430 2017 Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.
rs132289 in 
KREMEN1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs35522438 in 
KRIT1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs73110464 in 
KRT8 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs140614180 in 
L3MBTL2-AS1;L3MBTL2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6569648 in 
L3MBTL3 gene and 
Breast Carcinoma
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7637701 in 
LEKR1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17489300 in 
LGR6 gene and 
Breast Carcinoma
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
rs4593472 in 
LINC-PINT gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs16992204 in 
LINC00160;LOC107985515 gene and 
Breast Carcinoma
PMID 27354352 2016 The second locus, rs16992204 at 21q22.12 (near the LINC00160 gene), was associated with breast cancer risk with OR (95% CI) of 1.13 (1.07-1.18) and a P-value of 4.63 × 10 <sup>-</sup>  <sup>8</sup> The risk allele frequency for this SNP is zero in European-ancestry populations in 1000 Genomes Project and thus its association with breast cancer risk cannot be assessed in DRIVE GAME-ON Consortium.
rs34546498 in 
LINC00240 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13267382 in 
LINC00536 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs77457752 in 
LINC00583;LOC101929507 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs200087884 in 
LINC00623 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11652463 in 
LINC00673;LINC00511 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs78579487 in 
LINC00886 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10169133 in 
LINC01376 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs1978503 in 
LINC01416;LOC107985164 gene and 
Breast Carcinoma
PMID 17903305 2007 A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.
rs537626 in 
LINC01488 gene and 
Breast Carcinoma
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
rs58058861 in 
LINC02068 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs77569618 in 
LINC02236 gene and 
Breast Carcinoma
PMID 31371054 2019 Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.
rs1189020 in 
LINC02284 gene and 
Breast Carcinoma
PMID 31371054 2019 Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.
rs35419901 in 
LINC02621 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs117649165 in 
LINC02646 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1233480 in 
LINC02829 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12920416 in 
LINC02861 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10760444 in 
LMX1B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs75116627 in 
LOC101927252;WDR75 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11583393 in 
LOC101927871;PKN2-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs34005590 in 
LOC101928278 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs139530473 in 
LOC101928957 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs3130834 in 
LOC101929006 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs149936356 in 
LOC101929594;TTC28 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs71557345 in 
LOC102724851 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs138672638 in 
LOC102725238 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1265507 in 
LOC105369998 gene and 
Breast Carcinoma
PMID 22532574 2012 Identification of a novel percent mammographic density locus at 12q24.
rs1292011 in 
LOC105370003 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs2236007 in 
LOC105370455;PAX9 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs2243905 in 
LOC105370546;RAD51B gene and 
Breast Carcinoma
PMID 23001122 2012 Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.
rs150658557 in 
LOC105370625 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs28539243 in 
LOC105371274 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs4496150 in 
LOC105371393 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6682208 in 
LOC105371692 gene and 
Breast Carcinoma
PMID 23544013 2013 Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.
rs8081187 in 
LOC105371723 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs4342822 in 
LOC105372912;PROX1-AS1 gene and 
Breast Carcinoma
PMID 29059430 2017 Among survivors who received 10 or higher gray breast radiation exposure, a locus on 1q41 was associated with subsequent breast cancer risk (rs4342822, nearest gene PROX1 , risk allele frequency in control subjects [RAF controls ] = 0.46, hazard ratio = 1.92, 95% confidence interval = 1.49 to 2.44, P = 7.09 × 10 -9 ).
rs132390 in 
LOC105372985;EMID1 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs112257290 in 
LOC105373835;FAM126B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13387042 in 
LOC105373874;LOC101928278 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 21263130 2011 Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.
PMID 19330030 2009 A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 17529974 2007 At present, no genes have been identified in the linkage disequilibrium block containing rs13387042. rs3803662 is near the 5' end of TNRC9 , a high mobility group chromatin-associated protein whose expression is implicated in breast cancer metastasis to bone.
rs3129178 in 
LOC105375003 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17268829 in 
LOC105375404 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1519814 in 
LOC105375730;COL14A1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17350191 in 
LOC105375739 gene and 
Breast Carcinoma
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
rs1119997 in 
LOC105375759;LOC105375760 gene and 
Breast Carcinoma
PMID 31371054 2019 Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.
rs10816625 in 
LOC105376214 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 21263130 2011 We identified a novel risk locus for breast cancer at 9q31.2 (rs865686: OR = 0.89, 95% CI = 0.85 to 0.92, P = 1.75 × 10(-10)).
rs1966977 in 
LOC105377552 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1375631 in 
LOC105377641 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6556756 in 
LOC105377703;LINC02143 gene and 
Breast Carcinoma
PMID 17903305 2007 A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.
rs17530068 in 
LOC105377871 gene and 
Breast Carcinoma
PMID 22976474 2012 Similarly, rs17530068 at 6q14 was associated with breast cancer (OR = 1.12; P = 1.1 × 10(-9)), and with both ER-positive (OR = 1.09; P = 1.5 × 10(-5)) and ER-negative (OR = 1.16, P = 2.5 × 10(-7)) disease.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs9361840 in 
LOC105377871;TENT5A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs748476 in 
LOC105378521 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12655019 in 
LOC105378980 gene and 
Breast Carcinoma
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
rs58742730 in 
LOC107984270 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs903263 in 
LOC107985046;PRKACB gene and 
Breast Carcinoma
PMID 23001122 2012 Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.
rs28512361 in 
LOC107985535 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs185004002 in 
LOC107985541;RFPL1S gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17587029 in 
LOC107985934 gene and 
Breast Carcinoma
PMID 31371054 2019 Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.
rs75316749 in 
LOC107986051 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs11977670 in 
LOC107986854 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs514192 in 
LOC107986961 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2594714 in 
LOC284454 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs72932540 in 
LOC338694;SMIM38 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13162653 in 
LOC401176 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs35417517 in 
LRRD1;CYP51A1-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1973765 in 
LSP1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 17529967 2007 Genome-wide association study identifies novel breast cancer susceptibility loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
rs1230666 in 
MAGI3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1017226 in 
MAP3K1 gene and 
Breast Carcinoma
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
rs145407011 in 
MAP4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs62061734 in 
MAPT gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12077974 in 
MAST2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs16991615 in 
MCM8 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2290854 in 
MDM4 gene and 
Breast Carcinoma
PMID 23544013 2013 We identified a novel breast cancer risk modifier locus at 1q32 for BRCA1 carriers (rs2290854, P = 2.7 × 10(-8), HR = 1.14, 95% CI: 1.09-1.20).
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
rs6890270 in 
MIER3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
rs71801447 in 
MIR4435-2HG;BCL2L11 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs9348512 in 
MIR5689HG gene and 
Breast Carcinoma
PMID 23544012 2013 Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.
rs7098100 in 
MLLT10 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7072776 in 
MLLT10;LOC107984214 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs45589338 in 
MN1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs62193398 in 
MPP4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs217727 in 
MRPL23;HOTS;H19 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6001930 in 
MRTFA gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs11205303 in 
MTMR11 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2974935 in 
MTX1 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs56387622 in 
MYL3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7249698 in 
MYO9B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs368121891 in 
NBPF10 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs200648189 in 
NCOA1 gene and 
Breast Carcinoma
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
rs114962751 in 
NDUFB3;FAM126B gene and 
Breast Carcinoma
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
rs1357245 in 
NEK10 gene and 
Breast Carcinoma
PMID 19330027 2009 Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2.
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
rs16342 in 
NELFA gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs78269692 in 
NFIX gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs61755581 in 
NIN gene and 
Breast Carcinoma
PMID 30787463 2019 Genome-wide association study of germline variants and breast cancer-specific mortality.
rs183421746 in 
NIPSNAP1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs372562666 in 
NOTCH2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6882649 in 
NREP gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2822999 in 
NRIP1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs9257809 in 
OR12D3;OR5V1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs62485509 in 
OR2A1-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12048493 in 
OTUD7B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs1707302 in 
P3R3URF-PIK3R3;LOC101929626;PIK3R3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1924553 in 
PADI6 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs180177132 in 
PALB2 gene and 
Breast Carcinoma
PMID 23448497 2013 About 1.5% (95% CI 0.6to 2.4) of Australasian multiple-case breast cancer families attending clinics are segregating protein-truncating mutations in PALB2, most being PALB2 c.3113G>A, p.Trp1038*.
PMID 21285249 2011 Contribution of inherited mutations in the BRCA2-interacting protein PALB2 to familial breast cancer.
PMID 21182766 2010 Further screening for PALB2 c.3113G > A (W1038X) was conducted for 779 families with multiple cases of breast cancer ascertained through family cancer clinics in Australia and New Zealand and 764 population-based controls.
PMID 20122277 2010 A novel germline PALB2 deletion in Polish breast and ovarian cancer patients.
PMID 20412113 2010 PALB2 mutations in European familial pancreatic cancer families.
rs3829964 in 
PANDAR;CDKN1A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs26067 in 
PARP8 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs130318 in 
PARVB gene and 
Breast Carcinoma
PMID 25117820 2014 Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.
rs7149262 in 
PAX9 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1562430 in 
PCAT1;CASC8;CASC21;POU5F1B gene and 
Breast Carcinoma
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
PMID 21263130 2011 Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.
rs9808759 in 
PCNT gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1353747 in 
PDE4D gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs113855064 in 
PDS5B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs111307654 in 
PEG10;SGCE gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10864459 in 
PEX14 gene and 
Breast Carcinoma
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs17356907 in 
PGAM1P5 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs666930 in 
PHGDH gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs35383942 in 
PHLDA3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs66849333 in 
PHLDB3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6597981 in 
PIDD1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs370356098 in 
PIP4K2A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs62235635 in 
PITPNB;TTC28-AS1;MIR3199-2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2725207 in 
PKD2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7524950 in 
PKLR gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17426269 in 
PKN2-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs4820318 in 
PLA2G6 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11374964 in 
POGLUT3 gene and 
Breast Carcinoma
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
rs369574511 in 
POLR2J gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs56114371 in 
POM121L2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10096351 in 
POU5F1B;PCAT1;CASC8;CASC21 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs77928427 in 
PPA2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs147451859 in 
PPCDC gene and 
Breast Carcinoma
PMID 31371054 2019 Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.
rs10022462 in 
PPM1K-DT gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs643506 in 
PPP2R1B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2290203 in 
PRC1-AS1;PRC1 gene and 
Breast Carcinoma
PMID 25038754 2014 In a three-stage genome-wide association study among East Asian women including 22,780 cases and 24,181 controls, we identified 3 genetic loci newly associated with breast cancer risk, including rs4951011 at 1q32.1 (in intron 2 of the ZC3H11A gene; P=8.82×10(-9)), rs10474352 at 5q14.3 (near the ARRDC3 gene; P=1.67×10(-9)) and rs2290203 at 15q26.1 (in intron 14 of the PRC1 gene; P=4.25×10(-8)).
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10629804 in 
PRDM6 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1450985 in 
PRICKLE2-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1937680 in 
PRKG1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs8027365 in 
PTPN9 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs76007978 in 
PTPRD gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs117114682 in 
PTPRN2 gene and 
Breast Carcinoma
PMID 29059430 2017 Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.
rs11780156 in 
PVT1 gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs1028842 in 
RAD51B gene and 
Breast Carcinoma
PMID 23001122 2012 Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 22232737 2012 Novel genetic markers of breast cancer survival identified by a genome-wide association study.
PMID 19330030 2009 A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).
rs1952246 in 
RAD51B;LOC105370546 gene and 
Breast Carcinoma
PMID 23001122 2012 Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.
rs2284378 in 
RALY gene and 
Breast Carcinoma
PMID 22976474 2012 SNP rs2284378 at 20q11 was associated with ER-negative breast cancer (combined two-stage OR = 1.16; P = 1.1 × 10(-8)) but showed a weaker association with overall breast cancer (OR = 1.08, P = 1.3 × 10(-6)) based on 17 869 cases and 43 745 controls and no association with ER-positive disease (OR = 1.01, P = 0.67) based on 9965 cases and 22 902 controls.
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs418053 in 
RANBP9 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6776003 in 
RASA2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12962334 in 
RBBP8 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs4814894 in 
RIN2;LOC107987276 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11627032 in 
RIN3 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1314914 in 
RN7SL108P;RAD51B gene and 
Breast Carcinoma
PMID 23001122 2012 Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.
rs12405132 in 
RNF115 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2180341 in 
RNF146 gene and 
Breast Carcinoma
PMID 18326623 2008 Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33.
rs111730030 in 
RPL12P42 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs66823261 in 
RPL23AP53 gene and 
Breast Carcinoma
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs17020562 in 
RPS6KC1 gene and 
Breast Carcinoma
PMID 29059430 2017 Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.
rs66964413 in 
RTKN2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12506630 in 
SCFD2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6507583 in 
SETBP1 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs3184504 in 
SH2B3;ATXN2 gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs6788895 in 
SIAH2 gene and 
Breast Carcinoma
PMID 22951594 2012 A genome-wide association study identifies a genetic variant in the SIAH2 locus associated with hormonal receptor-positive breast cancer in Japanese.
rs201462698 in 
SIK3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs9952980 in 
SLC14A2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13198474 in 
SLC17A3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6860806 in 
SLC22A4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs848087 in 
SLC25A21 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs376045897 in 
SLC30A6;NLRC4 gene and 
Breast Carcinoma
PMID 30787463 2019 Genome-wide association study of germline variants and breast cancer-specific mortality.
rs4973768 in 
SLC4A7 gene and 
Breast Carcinoma
PMID 21263130 2011 Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 19330027 2009 Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2.
rs4742903 in 
SMC2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1962373 in 
SPAG17 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs72814839 in 
SPAG6 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs187408367 in 
SREBF1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs7258465 in 
SSBP4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs377629160 in 
STAG3L2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2787486 in 
STXBP4 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 19330027 2009 Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs12519859 in 
SUB1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs6453204 in 
SV2C gene and 
Breast Carcinoma
PMID 25117820 2014 Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.
rs35409891 in 
TAB2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 22383897 2012 This study provides strong evidence for a novel breast cancer susceptibility locus represented by rs9485372, near the TAB2 gene (6q25.1), and identifies two possible susceptibility loci located in the ESR1 gene and 11q24.3, respectively.
rs2253762 in 
TACC2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs74949440 in 
TAGLN;LOC100652768 gene and 
Breast Carcinoma
PMID 29059430 2017 Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.
rs55910451 in 
TASOR2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs111780165 in 
TBC1D29P gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10885405 in 
TCF7L2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23544013 2013 Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
rs146699004 in 
TEFM gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6912005 in 
TENT5A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10069690 in 
TERT gene and 
Breast Carcinoma
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
PMID 22037553 2011 We identified a common risk variant for ER-negative breast cancer at the TERT-CLPTM1L locus on chromosome 5p15 (rs10069690: per-allele odds ratio (OR) = 1.18 per allele, P = 1.0 × 10(-10)).
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs62331150 in 
TET2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs2726492 in 
TET2-AS1;TET2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12493607 in 
TGFBR2 gene and 
Breast Carcinoma
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
rs1295683 in 
TH2LCRR gene and 
Breast Carcinoma
PMID 30787463 2019 Genome-wide association study of germline variants and breast cancer-specific mortality.
rs6815814 in 
TLR1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs78264913 in 
TMTC1 gene and 
Breast Carcinoma
PMID 31371054 2019 Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.
rs13116936 in 
TNIP3 gene and 
Breast Carcinoma
PMID 23468962 2013 A genome-wide scan for breast cancer risk haplotypes among African American women.
rs909116 in 
TNNT3 gene and 
Breast Carcinoma
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
rs12483853 in 
TNRC6B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs6436017 in 
TNS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2193094 in 
TOX3 gene and 
Breast Carcinoma
PMID 25956309 2015 Genome-wide association study of susceptibility loci for breast cancer in Sardinian population.
PMID 24493630 2014 A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
rs13230714 in 
TPK1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2714486 in 
TRAK2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2523992 in 
TRIM31-AS1;TRIM31 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs4971059 in 
TRIM46 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13277568 in 
TRPS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs322144 in 
TSPAN16 gene and 
Breast Carcinoma
PMID 29058716 2017 Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
rs111342015 in 
TTBK1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs62237573 in 
TTC28 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs11168936 in 
TUBA1C gene and 
Breast Carcinoma
PMID 27197191 2016 Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
rs6938 in 
ULK3;SCAMP2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs8100241 in 
USHBP1;ANKLE1 gene and 
Breast Carcinoma
PMID 22976474 2012 A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.
rs71063528 in 
USP28 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs707475 in 
UTS2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13066793 in 
VGLL3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs67073037 in 
WDR43 gene and 
Breast Carcinoma
PMID 27117709 2016 Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.
rs199498 in 
WNT3;LRRC37A2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs62237039 in 
XPNPEP3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs73161324 in 
XRCC6 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs2304098 in 
YJEFN3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs34119086 in 
ZBED9 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs34207738 in 
ZBTB38 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs4951011 in 
ZC3H11A;ZBED6 gene and 
Breast Carcinoma
PMID 25038754 2014 In a three-stage genome-wide association study among East Asian women including 22,780 cases and 24,181 controls, we identified 3 genetic loci newly associated with breast cancer risk, including rs4951011 at 1q32.1 (in intron 2 of the ZC3H11A gene; P=8.82×10(-9)), rs10474352 at 5q14.3 (near the ARRDC3 gene; P=1.67×10(-9)) and rs2290203 at 15q26.1 (in intron 14 of the PRC1 gene; P=4.25×10(-8)).
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs73176670 in 
ZC3H7B gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs12546444 in 
ZFPM2 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13214023 in 
ZKSCAN3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs1268974 in 
ZMIZ1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
rs34196306 in 
ZNF184 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs10822013 in 
ZNF365 gene and 
Breast Carcinoma
PMID 21908515 2011 Our results strongly implicate rs10822013 at 10q21.2 as a genetic risk variant for breast cancer among East-Asian women.
PMID 23535729 2013 Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
PMID 23535733 2013 Genome-wide association studies identify four ER negative-specific breast cancer risk loci.
PMID 20453838 2010 Genome-wide association study identifies five new breast cancer susceptibility loci.
PMID 25751625 2015 Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs143072280 in 
ZNF37A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs375066 in 
ZNF45 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs8113308 in 
ZNF613 gene and 
Breast Carcinoma
PMID 25964295 2015 In a multivariate analysis adjusted for conventional prognostic factors, we found a significant interaction between the rs8113308 and endocrine treatment, indicating a predictive, treatment-specific effect of the SNP rs8113308 on breast cancer survival, with the per-allele HR for interaction 2.16 (95% CI, 1.30-3.60; Pinteraction = 0.003) and HR = 7.77 (95% CI, 0.93-64.71) for the homozygous genotype carriers.
rs3094146 in 
ZNRD1ASP;HLA-A gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs13054095 in 
ZNRF3 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.
rs34662244 in 
ZSCAN16-AS1 gene and 
Breast Carcinoma
PMID 29059683 2017 Association analysis identifies 65 new breast cancer risk loci.