Condition: Multiple Sclerosis 
rs17388568 in 
ADAD1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs11676922 in 
AFF3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs7120737 in 
AGBL2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs3134943 in 
AGPAT1;MIR6833;RNF5 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs11154801 in 
AHI1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs7517698 in 
AK5 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs6859219 in 
ANKRD55 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2476601 in 
AP4B1-AS1;PTPN22 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3130050 in 
APOM;BAG6 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs11712165 in 
ARHGAP31 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3828309 in 
ATG16L1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs548234 in 
ATG5 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs653178 in 
ATXN2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs8049439 in 
ATXN2L gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs10806425 in 
BACH2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs760293 in 
BAG6 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs10516487 in 
BANK1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2300603 in 
BATF gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs17840186 in 
BRD2;HLA-DMA gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2076533 in 
BTNL2;TSBP1-AS1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs229541 in 
C1QTNF6 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2201841 in 
C1orf141;IL23R gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3130975 in 
C6orf15;PSORS1C1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2456449 in 
CASC19;PCAT1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs9657904 in 
CBLB;LOC107986109 gene and 
Multiple Sclerosis
PMID 20453840 2010 Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.
PMID 28445677 2017 Overexpression of the Cytokine BAFF and Autoimmunity Risk.
rs13098911 in 
CCR3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs763361 in 
CD226 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs4810485 in 
CD40 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs1335532 in 
CD58 gene and 
Multiple Sclerosis
PMID 19525955 2009 Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24234648 2014 No evidence for shared genetic basis of common variants in multiple sclerosis and amyotrophic lateral sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs17824933 in 
CD6 gene and 
Multiple Sclerosis
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs11052877 in 
CD69 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs4308217 in 
CD86 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs8112449 in 
CDC37 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs1886700 in 
CDH3 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs6908425 in 
CDKAL1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3130981 in 
CDSN;PSORS1C1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs4665719 in 
CENPO;LOC105369164;PTRHD1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs9388489 in 
CENPW gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2072633 in 
CFB;CYP21A2;NELFE gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs9283487 in 
CHROMR;PRKRA gene and 
Multiple Sclerosis
PMID 23472185 2013 Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
rs11860603 in 
CLEC16A gene and 
Multiple Sclerosis
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 28445677 2017 Overexpression of the Cytokine BAFF and Autoimmunity Risk.
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs7184083 in 
CLEC16A;LOC105371081 gene and 
Multiple Sclerosis
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
rs10466829 in 
CLECL1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs17411949 in 
CLSTN2 gene and 
Multiple Sclerosis
PMID 23472185 2013 Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
rs3004212 in 
CSGALNACT2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs3087243 in 
CTLA4 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs10823051 in 
CTNNA3 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs3825932 in 
CTSH gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs523604 in 
CXCR5 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs644045 in 
CYP21A2;C2 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs486416 in 
CYP21A2;EHMT2 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2242665 in 
CYP21A2;SLC44A4 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs9267658 in 
CYP21A2;SLC44A4;EHMT2-AS1 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs389883 in 
CYP21A2;STK19 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs2248359 in 
CYP24A1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs11587876 in 
DDAH1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs3115537 in 
DDX39B;MCCD1;ATP6V1G2-DDX39B gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs3130000 in 
DHX16 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2303759 in 
DKKL1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2812197 in 
DLEU1 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs535586 in 
EHMT2;CYP21A2 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs659445 in 
EHMT2;CYP21A2;C2 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs60600003 in 
ELMO1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2371108 in 
EOMES gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs10411936 in 
EPS15L1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2292239 in 
ERBB3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2836425 in 
ERG gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs11221332 in 
ETS1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs10735781 in 
EVI5 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 26819262 2016 Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs13315591 in 
FAM107A;LOC107984079 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2050568 in 
FCRL1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs3761959 in 
FCRL3 gene and 
Multiple Sclerosis
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
rs2301436 in 
FGFR1OP gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs9828629 in 
FOXP1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs74796499 in 
GALC gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs762421 in 
GATD3A gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs6689470 in 
GFI1 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs210131 in 
GGNBP1 gene and 
Multiple Sclerosis
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
rs7020673 in 
GLIS3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs17519972 in 
GLMN;RPAP2 gene and 
Multiple Sclerosis
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
rs2290400 in 
GSDMB gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs733724 in 
HACE1 gene and 
Multiple Sclerosis
PMID 23412934 2013 A genome-wide association study of brain lesion distribution in multiple sclerosis.
rs4713429 in 
HCG22 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs3117098 in 
HCG23;TSBP1-AS1 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs3094609 in 
HCG27 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs2844507 in 
HCP5 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs9260489 in 
HLA-A gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3132486 in 
HLA-B gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs6906846 in 
HLA-B;USP8P1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs151719 in 
HLA-DMB gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs1050391 in 
HLA-DMB;HLA-DMA gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2040406 in 
HLA-DQA1 gene and 
Multiple Sclerosis
PMID 20453840 2010 Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2227127 in 
HLA-DQA2 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2051549 in 
HLA-DQB2 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2395182 in 
HLA-DRA gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
PMID 23472185 2013 Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
PMID 25616667 2015 Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.
rs2454138 in 
HLA-DRB1 gene and 
Multiple Sclerosis
PMID 29521573 2019 Effect of HLA-DRB1 alleles and genetic variants on the development of neutralizing antibodies to interferon beta in the BEYOND and BENEFIT trials.
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs3828840 in 
HLA-DRB6;HLA-DRB4 gene and 
Multiple Sclerosis
PMID 23472185 2013 Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
rs6903608 in 
HLA-DRB9 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs1632953 in 
HLA-F gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs1059174 in 
HLA-F-AS1;HLA-F gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs1610603 in 
HLA-F;HLA-F-AS1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
rs2412973 in 
HORMAD2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs5753037 in 
HORMAD2;LOC105372988 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2227956 in 
HSPA1L gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs4675374 in 
ICOS;LOC101927840 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs4819388 in 
ICOSLG gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs11554159 in 
IFI30 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1990760 in 
IFIH1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs1558744 in 
IFNG-AS1;LOC107984526 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs9808753 in 
IFNGR2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1004446 in 
IGF2;INS-IGF2;IGF2-AS gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs11621145 in 
IGHA1 gene and 
Multiple Sclerosis
PMID 25616667 2015 Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.
rs1014486 in 
IL12A-AS1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs20541 in 
IL13;TH2LCRR gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs5771069 in 
IL17REL gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs11465804 in 
IL23R gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs4788084 in 
IL27 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs1107345 in 
IL2RA gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
PMID 28445677 2017 Overexpression of the Cytokine BAFF and Autoimmunity Risk.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 26819262 2016 Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs743777 in 
IL2RB gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs6881706 in 
IL7R gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs2255214 in 
ILDR1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 26819262 2016 Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs55838263 in 
INAVA gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs1920296 in 
IQCB1 gene and 
Multiple Sclerosis
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs8042861 in 
IQGAP1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2188962 in 
IRF1-AS1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs11747270 in 
IRGM gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs11860650 in 
ITGAM gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2274910 in 
ITLN1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs942637 in 
ITPR3 gene and 
Multiple Sclerosis
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
rs849142 in 
JAZF1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2670117 in 
KCNMA1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs13151961 in 
KIAA1109 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2150702 in 
KIAA2026;MLANA gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs10492972 in 
KIF1B gene and 
Multiple Sclerosis
PMID 18997785 2008 Genetic variation in the KIF1B locus influences susceptibility to multiple sclerosis.
rs12122721 in 
KIF21B gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs1805755 in 
KLRG1;M6PR gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs7809799 in 
KPNA7 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3764147 in 
LACC1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3094123 in 
LINC00243 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs394199 in 
LINC00336;GGNBP1 gene and 
Multiple Sclerosis
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
rs522127 in 
LINC01100;IL12A-AS1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2119704 in 
LINC01147 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs842639 in 
LINC01185 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs6017342 in 
LINC01620 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs13010713 in 
LINC01934 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs170934 in 
LINC01967 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 26819262 2016 Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.
rs10517086 in 
LINC02357 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2524095 in 
LINC02571;HLA-B;LOC112267902 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs6718520 in 
LINC02580 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs12466022 in 
LINC02580;LOC105374570 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs4750316 in 
LINC02649;LINC02656 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs13279485 in 
LOC100131395;ARHGEF10 gene and 
Multiple Sclerosis
PMID 23412934 2013 A genome-wide association study of brain lesion distribution in multiple sclerosis.
rs241403 in 
LOC100294145 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs10797431 in 
LOC100996583 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs9320598 in 
LOC101927314 gene and 
Multiple Sclerosis
PMID 23785401 2013 Association of genetic markers with CSF oligoclonal bands in multiple sclerosis patients.
rs1736135 in 
LOC101927745 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs17119 in 
LOC101928354 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs10509540 in 
LOC101929727;RNLS gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs694739 in 
LOC102723878 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs10500817 in 
LOC102724957 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs175126 in 
LOC105369325 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs533646 in 
LOC105369519 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs9523762 in 
LOC105370315;GPC5 gene and 
Multiple Sclerosis
PMID 19010793 2009 Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.
rs12928822 in 
LOC105371082;RMI2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs6498184 in 
LOC105371083;RMI2;LOC105371082 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1323292 in 
LOC105371664 gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs1551398 in 
LOC105375746 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs1021156 in 
LOC105375911 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1891621 in 
LOC105376481 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs11719975 in 
LOC105376976 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs13314993 in 
LOC105377022 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs212405 in 
LOC105378083 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1738074 in 
LOC105378083;LOC107986664;TAGAP gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs212389 in 
LOC105378083;LOC112267968 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3093023 in 
LOC105378122;CCR6 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2503875 in 
LOC105378271 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs4772201 in 
LOC107984558 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs8021741 in 
LOC107984652 gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
rs7255066 in 
LOC107985305;PVR gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs882300 in 
LOC107985947 gene and 
Multiple Sclerosis
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
rs2524089 in 
LOC112267902;HLA-B;LINC02571 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs9355260 in 
LOC112267968 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs12025416 in 
LOC112268235 gene and 
Multiple Sclerosis
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
PMID 21244703 2011 Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.
rs2546890 in 
LOC285626 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs6072343 in 
LPIN3 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1464510 in 
LPP gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs12988804 in 
LRP2 gene and 
Multiple Sclerosis
PMID 28739605 2017 In the pooled results, using these three unique longitudinal MS cohorts, we discovered one novel locus (<i>LRP2</i>; most significant single nucleotide polymorphism rs12988804) that reached genome-wide significance in predicting relapse risk (HR=2.18, p=3.30×10<sup>-8</sup>).
rs6793295 in 
LRRC34 gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
rs11175593 in 
LRRK2;LRRK2-DT;LINC02471;LOC105369735 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs26232 in 
MACIR gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs7238078 in 
MALT1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs228614 in 
MANBA gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2283792 in 
MAPK1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs34286592 in 
MAZ;LOC112268170 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs2734573 in 
MCCD1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs17174870 in 
MERTK gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs703842 in 
METTL1;CYP27B1 gene and 
Multiple Sclerosis
PMID 19525955 2009 Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.
rs4953911 in 
MGAT5 gene and 
Multiple Sclerosis
PMID 20117844 2010 MGAT5 alters the severity of multiple sclerosis.
rs2905747 in 
MICB-DT gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs113116201 in 
MIR181A1HG gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1534422 in 
MIR3681HG gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2300747 in 
MIR548AC;CD58 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs3748816 in 
MMEL1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1790100 in 
MPHOSPH9 gene and 
Multiple Sclerosis
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
rs874628 in 
MPV17L2 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs11584383 in 
MROH3P gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3197999 in 
MST1;APEH gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs11949767 in 
MXD3 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs10936599 in 
MYNN gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs17696736 in 
NAA25 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs13260060 in 
NCOA2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2425752 in 
NCOA5 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
rs1036207 in 
NDFIP1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs630379 in 
NELFE;CYP21A2 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs11190140 in 
NKX2-3;LINC01475 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs13017599 in 
NONOP2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3131294 in 
NOTCH4 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs2935183 in 
NPEPPS gene and 
Multiple Sclerosis
PMID 24234648 2014 No evidence for shared genetic basis of common variants in multiple sclerosis and amyotrophic lateral sclerosis.
rs61731956 in 
NR1H3;MADD gene and 
Multiple Sclerosis
PMID 27253448 2016 In this study, we describe the identification of NR1H3 p.Arg415Gln in seven MS patients from two multi-incident families presenting severe and progressive disease, with an average age at onset of 34 years.
rs140522 in 
ODF3B gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
rs4654925 in 
OTUD3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs666930 in 
PHGDH gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs4963128 in 
PHRF1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs6679677 in 
PHTF1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs7132277 in 
PITPNM2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1520333 in 
PKIA-AS1;LOC105375911 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs17035378 in 
PLEK;LOC101927723 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3007421 in 
PLEKHG5 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs3130501 in 
POU5F1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs3130933 in 
POU5F1;TCF19 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs3134603 in 
PPT2-EGFL8;PPT2 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs425105 in 
PRKD2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2736172 in 
PRRC2A;SNORA38 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs60733400 in 
PRXL2B gene and 
Multiple Sclerosis
PMID 28445677 2017 Overexpression of the Cytokine BAFF and Autoimmunity Risk.
rs3130558 in 
PSORS1C1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs1893217 in 
PTPN2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs13003464 in 
PUS10 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2019960 in 
PVT1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs6445975 in 
PXK gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs941816 in 
PXT1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs397020 in 
RAD21L1 gene and 
Multiple Sclerosis
PMID 19010793 2009 Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.
rs4924273 in 
RASGRP1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs4075958 in 
RGS14 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs7535818 in 
RGS1;LOC105371664 gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs7191700 in 
RMI2;LOC105371082 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs533259 in 
RNASEL gene and 
Multiple Sclerosis
PMID 23412934 2013 A genome-wide association study of brain lesion distribution in multiple sclerosis.
rs1292034 in 
RPS6KB1 gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs11755724 in 
RREB1 gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
rs307896 in 
SAE1 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
rs4807569 in 
SBNO2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs189139 in 
SH3BP2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2281808 in 
SIRPG gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs706015 in 
SKAP2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs437179 in 
SKIV2L;CYP21A2 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs35967351 in 
SLAMF7 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs4285028 in 
SLC15A2 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
rs2256814 in 
SLC2A4RG gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs11581062 in 
SLC30A7;HNRNPA1P68 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs2288904 in 
SLC44A2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs644827 in 
SLC44A4;CYP21A2 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs17785991 in 
SLC9A8 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs6659742 in 
SNHG28 gene and 
Multiple Sclerosis
PMID 23472185 2013 Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
rs10201872 in 
SP140 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs495337 in 
SPATA2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs931555 in 
SPEF2;LOC105374724 gene and 
Multiple Sclerosis
PMID 21244703 2011 Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.
rs934734 in 
SPRED2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2066808 in 
STAT2 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2293152 in 
STAT3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 20159113 2010 SNP (rs744166) within the STAT3 gene was associated to MS (p = 2.75 x 10(-10), OR 0.87, confidence interval 0.83-0.91).
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs7574865 in 
STAT4 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs794185 in 
SUMF1 gene and 
Multiple Sclerosis
PMID 20802204 2010 Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.
rs290986 in 
SYK gene and 
Multiple Sclerosis
PMID 26920376 2016 Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs2205986 in 
SYT14 gene and 
Multiple Sclerosis
PMID 30013178 2018 Analysis of an independent cohort of IFN-β-treated MS patients identified via electronic medical records showed that rs2205986 was also associated with increased peak levels of aspartate aminotransferase (P = 7.6 × 10<sup>-5</sup>) and alkaline phosphatase (P = 4.9 × 10<sup>-4</sup>).
rs241427 in 
TAP2 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2073723 in 
TCF19 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2073167 in 
TEF gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs2726518 in 
TET2-AS1;TET2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs1131265 in 
TIMMDC1 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs1132200 in 
TMEM39A gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs5029937 in 
TNFAIP3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs1800693 in 
TNFRSF1A gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 19525953 2009 Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
rs1077667 in 
TNFSF14 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs4263839 in 
TNFSF15 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2205960 in 
TNFSF4 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs7708392 in 
TNIP1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs16978630 in 
TNPO2 gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
rs10488631 in 
TNPO3 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs17421624 in 
TNXB gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs4925166 in 
TOP3A gene and 
Multiple Sclerosis
PMID 27386562 2016 Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.
rs3761847 in 
TRAF1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs12148050 in 
TRAF3 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs3130320 in 
TSBP1-AS1 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
rs2076530 in 
TSBP1-AS1;BTNL2 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 23472185 2013 Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
rs2894249 in 
TSBP1-AS1;TSBP1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs3129900 in 
TSBP1;TSBP1-AS1 gene and 
Multiple Sclerosis
PMID 17660530 2007 Risk alleles for multiple sclerosis identified by a genomewide study.
PMID 22457343 2012 A genome-wide association study in progressive multiple sclerosis.
PMID 18941528 2008 Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs201202118 in 
TSFM gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs12368653 in 
TSPAN31;AGAP2 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 19525955 2009 Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.
rs4648356 in 
TTC34 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs34536443 in 
TYK2 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs9976767 in 
UBASH3A gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs3780792 in 
VAV2 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs2777899 in 
VMP1 gene and 
Multiple Sclerosis
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs7924357 in 
WTAPP1 gene and 
Multiple Sclerosis
PMID 23412934 2013 A genome-wide association study of brain lesion distribution in multiple sclerosis.
rs12149527 in 
WWOX gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs9846396 in 
ZBTB38 gene and 
Multiple Sclerosis
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs6062314 in 
ZBTB46 gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
rs1465788 in 
ZFP36L1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
rs1728785 in 
ZFP90 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs2315008 in 
ZGPAT gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
rs1250542 in 
ZMIZ1 gene and 
Multiple Sclerosis
PMID 22190364 2011 Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
PMID 31407831 2019 Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.
PMID 24076602 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
rs3745672 in 
ZNF433-AS1;ZNF433 gene and 
Multiple Sclerosis
PMID 20598377 2010 Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
rs354033 in 
ZNF767P gene and 
Multiple Sclerosis
PMID 21833088 2011 Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.